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Sol Comparative Genomics
Solanaceae Genome Facts
Data Versioning
Potato Chr. 6 Sequencing
Potato BACs Summary
Species
Atropa
Atropa belladonna
Capsicum
Capsicum annuum
Capsicum frutescens
Nicotiana
Nicotiana benthamiana
Nicotiana langsdorffii x Nicotiana sanderae
Nicotiana sylvestris
Nicotiana tabacum
Nicotiana tomentosiformis
Petunia
Petunia integrifolia subsp. inflata
Petunia x hybrida
Solanum
Solanum bulbocastanum
Solanum chacoense
Solanum cheesmaniae
Solanum demissum
Solanum habrochaites
Solanum lycopersicum
Solanum melongena
Solanum pennellii
Solanum phureja
Solanum pimpinellifolium
Solanum sp. VFNT
Solanum tuberosum
Tubocapsicum
Tubocapsicum anomalum
Withania
Withania somnifera
Analyses/Tools
Genome Browsers
Solanaceae
Arabidopsis
Grape
Poplar
BLAST
Comparative Mapping
Orthologs/Paralogs
Lineage-Specific Genes
SNPs
SSRs
SSR Database Search
SSR Summary Statistics
SSR Pipeline Overview
Solanaceae Repeat Database
Genetic Markers
Arabidopsis COSII
Eggplant
Pepper
Potato
Tomato
QTL Papers
Downloads
FTP Site
Analyses/Tools
BLAST Search
BLAST Search
Solanaceae Genomics Resource BLAST Server
Select type of BLAST Search
blastn
blastp
blastx
tblastn
tblastx
Search a nucleotide database using a nucleotide query
Enter Query Sequence
Enter DNA FASTA sequence:
or upload a file of DNA FASTA sequence:
Choose Database to Search
Select the BLAST database you would like to search:
Click here
for more info on available BLAST databases
BLAST databases last updated on Mon Aug 31 16:57:18 2009
Submit BLAST Search
Search selected nucleotide database using blastn
Optional BLAST Parameters
Expect Threshold:
1e-200
1e-100
1e-50
1e-20
1e-10
1e-5
1e-4
1e-3
1e-2
1e-1
1
10
100
1000
Max Number of Alignments:
1
5
10
20
50
100
250
500
Max Number of Descriptions:
1
5
10
20
50
100
250
500
Word Length:
7
11
15
Filter:
none
dust
View Filter:
no
yes
Matrix:
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Strand:
both
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