Solanum phureja Transcriptome Sequencing

Projects
Potato Genome Sequencing
DM Transcriptome Sequencing

DM Transcriptome Sequencing Tissue Libraries

Tissue Name	Tissue Description	Single Reads	Total Reads: Single Reads	Single Reads NCBI SRA Sample Accession ID	Paired Reads	Total Reads: Paired Reads	Paired Reads NCBI SRA Sample Accession ID	NCBI SRA Study Accession ID
ABA	Whole plants, treated with 50 uM ABA, 24 hr	36 bp	16,941,649	SRS173936.1				SRP005965.2
BABA	Detached leaves, elicitor (BABA) pooled at 24 h, 48 hr, 72 hr	36 bp	33,733,539	SRS173931.1				SRP005965.2
BAP	Whole plants, treated with 10 uM BAP, 24 hr	36 bp	25,112,442	SRS173939.1				SRP005965.2
BTH	Detached leaves, elicitor (BTH) pooled at 24 h, 48 hr, 72 hr	36 bp	28,564,425	SRS173932.1				SRP005965.2
Callus	Callus (10 and 11 week old) generated from leaves and stems	36 bp	15,852,698	SRS173950.1	105/85 bp	25,128,520	SRS173951.1	SRP005965.2
Carpels	Carpels	36 bp	20,723,777	SRS173963.2				SRP005965.2
Control	Detached leaves, control for biotic stress pooled at 24 h, 48 hr, 72 hr	36 bp	27,792,294	SRS173929.1				SRP005965.2
Control	Whole plants, Control for salt and mannitol treatment	36 bp	22,044,484	SRS173928.1				SRP005965.2
Control	Whole plants, Control for IAA, GA3, BAP, and ABA treatment	36 bp	18,874,010	SRS173935.1				SRP005965.2
Control	Whole plants, Control for 35 C treatment	36 bp	17,560,056	SRS173941.1	105/85 bp	39,071,562	SRS173942.1	SRP005965.2
Fruit mesocarp and endocarp	DM x A132-238, 4 week mesocarp and endocarp	36bp	37,090,514	SRS173968.2				SRP005965.2
GA3	Whole plants, treated with 50 uM GA3, 24 hr	36 bp	19,756,489	SRS173938.1				SRP005965.2
Heat	Whole plants, heat treated (35 C), 24 hr, dark	36 bp	29,974,942	SRS173943.1				SRP005965.2
IAA	Whole plants, treated with 10 uM IAA, 24 hr	36 bp	20,070,861	SRS173937.1				SRP005965.2
Immature whole fruit	DM x P055-14, 2.5 week immature whole fruit	36bp	38,285,431	SRS173966.1				SRP005965.2
Leaves	No treatment	36 bp	26,157,013	SRS173944.1				SRP005965.2
Mannitol	Whole plants, treated with 260 uM Mannitol, 24 hr	36 bp	17,540,271	SRS173934.1				SRP005965.2
Mature whole fruit	DM x S701-2, 6.5 week whole fruit	36bp	39,225,431	SRS173965.2				SRP005965.2
P. infestans	Detached leaves, pathogen challenge pooled at 24 h, 48 hr, 72 hr	36 bp	46,120,230	SRS173930.1				SRP005965.2
Petals	Petals	36 bp	29,066,497	SRS173961.1				SRP005965.2
Petioles	Petioles	36 bp	22,225,870	SRS173959.1	76 bp	49,114,314	SRS173960.1	SRP005965.2
Roots	Roots	36 bp	20,044,161	SRS173947.1	76 bp	91,723,550	SRS173948.1	SRP005965.2
Salt	Whole plants, treated with 150 mM NaCl, 24 hr	36 bp	20,536,983	SRS173933.1				SRP005965.2
Sepals	Sepals	36 bp	16,291,966	SRS173940.1				SRP005965.2
Shoots	Shoots	36 bp	25,824,317	SRS173949.1				SRP005965.2
Stamens	Stamens	36 bp	20,037,385	SRS173962.1				SRP005965.2
Stolons	Some stolons were above ground and were green	36 bp	15,957,004	SRS173952.1	76 bp	24,982,942	SRS173953.1	SRP005965.2
Tubers, Sample 1	Whole tubers, Harvested 5-5-09	36 bp	16,004,340	SRS173954.1				SRP005965.2
Tubers, Sample 2	Whole tubers, Harvested 6-1-09	36 bp	20,025,196	SRS173955.1	105/85 bp	41,459,674	SRS173956.1	SRP005965.2
Whole Mature Flowers	Whole mature flowers	36 bp	26,317,607	SRS173957.1	76 bp	47,829,268	SRS173958.1	SRP005965.2
Wounding, Primary	Wounded bottom two leaflets, 24 hr post wounding	36 bp	25,329,361	SRS173964.1				SRP005965.2
Wounding, secondary	Non-wounded leaflets, 24 hr post wounding	36 bp	17,019,337	SRS173945.1	105/85 bp	37,446,274	SRS173946.1	SRP005965.2