The search tools below (except for BLAST) use DM v4.03 data and we are working to update them to DM v6.1. DM v6.1 databases are available on the BLAST search.

Click on a choice below to open a query form.

 BLAST Search
 Functional Annotation Keyword Search
Functional Annotation Search
Search terms:
Search Potato Annotation Dataset:

Examples:   phytochrome, kinase, sucrose synthase


 InterPro ID & Keyword Search
InterPro ID & Keyword Search
Search terms:
Species:

Examples:   phytochrome, kinase, "sucrose synthase", IPR014045


 GO ID & Keyword Search
GO ID & Keyword Search
Search terms:
Species:

Examples:   "oxygen evolving complex", GO:0016020


 Sequence ID Search
Sequence ID Search
Gene ID:
Examples:
Solanum tuberosum group Phureja DM1-3 - PGSC PGSC0003DMT400034764, PGSC0003DMP400053402
Solanum tuberosum group Phureja DM1-3 - iTAG Sotub09g017160.1.1, Sotub12g024850.1.1


 Sequence Retriever
Sequence Retriever
–Retrieve the sequence for a given region.
Chromosome ( ex. chr01, chr02, chr12, chr00):
Start: Stop:
(Max region size < 100,000bp.)

OR
–Retrieve the sequence for a gene or transcript.
(ex. PGSC0003DMG400019774, PGSC0003DMT400080381)
Gene or Transcript ID:

OR
–Retrieve the sequence immediately upstream or downstream of a gene or transcript.
Number of base pairs: of Gene or Transcript ID:
(Max region size < 50,000bp.)