FTP Site- Downloads
Solanaceae Genomics Resource FTP Site
The project FTP site is publicly accessible via anonymous login at:
ftp://ftp.plantbiology.msu.edu/pub/sgr/
FTP Site Map
Potato BAC sequences
ftp.plantbiology.msu.edu/pub/sgr/potato/bacs
Potato BAC end sequences
ftp.plantbiology.msu.edu/pub/sgr/potato/bac_ends
Potato gene models predicted on BACs using the MAKER pipeline
ftp.plantbiology.msu.edu/pub/sgr/potato/annotation
Potato PUT sequences (from http://plantgdb.org)
ftp.plantbiology.msu.edu/pub/sgr/potato/puts
Tobacco BAC sequences
ftp.plantbiology.msu.edu/pub/sgr/tobacco/bacs
Tobacco BAC end sequences
ftp.plantbiology.msu.edu/pub/sgr/tobacco/bac_ends
Tobacco gene models predicted on BACs and TGI assemblies using the MAKER pipeline
ftp.plantbiology.msu.edu/pub/sgr/tobacco/annotation
Tobacco PUT sequences (from http://plantgdb.org)
ftp.plantbiology.msu.edu/pub/sgr/tobacco/puts
Tomato BAC sequences
ftp.plantbiology.msu.edu/pub/sgr/tomato/bacs
Tomato BAC end sequences
ftp.plantbiology.msu.edu/pub/sgr/tomato/bac_ends
Tomato gene models predicted on BACs using the MAKER pipeline
ftp.plantbiology.msu.edu/pub/sgr/tomato/annotation
Tomato PUT sequences (from http://plantgdb.org)
ftp.plantbiology.msu.edu/pub/sgr/tomato/puts
Solanaceae BAC sequences
ftp.plantbiology.msu.edu/pub/sgr/other/all_sol_bacs
Solanaceae BAC end sequences
ftp.plantbiology.msu.edu/pub/sgr/other/all_sol_bac_ends
Gene models annotated on the Sol BACs using MAKER
ftp.plantbiology.msu.edu/pub/sgr/other/all_sol_models
Solanaceae PUT sequences (from http://plantgdb.org)
ftp.plantbiology.msu.edu/pub/sgr/other/all_sol_puts
SNP analysis data
ftp.plantbiology.msu.edu/pub/sgr/other/snp
SSR analysis data
ftp.plantbiology.msu.edu/pub/sgr/other/ssr
Lineage-specific PUTs data
ftp.plantbiology.msu.edu/pub/sgr/other/lineage_specific_puts
Plant Repeats Databases Solanaceae repeat libraries (from http://plantrepeats.plantbiology.msu.edu)
ftp.plantbiology.msu.edu/pub/sgr/other/repeats
Best BLAST hit putative ortholog data
ftp.plantbiology.msu.edu/pub/sgr/other/ortholog_paralog/bbh/ortholog
Best BLAST hit putative paralog data
ftp.plantbiology.msu.edu/pub/sgr/other/ortholog_paralog/bbh/paralog
