Breeder's Assistant Tools

Data-mine the SolCAP 250 Clone Diversity Panel for Phenotype & Genotype Data

Use this tool to data-mine the SolCAP 250 clone diversity panel (Hirsch et al. 2013) for phenotype and genotype data from the SolCAP 8303 Infinium Array.

Launch SolCAP 250 Tool

Data-mine the SolCAP 250 Clone Diversity Panel for Phenotype Data

Use this tool to data-mine the SolCAP 250 clone diversity panel (Hirsch et al. 2013) for phenotype data from the SolCAP 8303 Infinium Array.

Launch SolCAP 250 Phenotype Tool

Data-mine the SolCAP 250 Clone Diversity Panel for Genotype Data

Use this tool to data-mine the SolCAP 250 clone diversity panel (Hirsch et al. 2013) for genotype data from the SolCAP 8303 Infinium Array.

Launch SolCAP 250 Genotype Tool

Single Nucleotide Polymorphism Finder

SNPs in the potato genome were identified by mapping transcripts from cultivated potato to the DM genome (Hamilton et al. 2011, Felcher et al. 2012) and by mapping whole genome shotgun reads of the heterozygous diploid RH89-039-16. Use this tool to search for SNPs based on genome location or annotated locus or transcript.

Launch SNP Finder Tool

Simple Sequence Repeat Finder

In the Potato Genome: Putative SSRs have been annotated in the DM genome. Click here to go to the Potato Genome Browser and select the region of the genome you wish to find SSRs. Or click below to launch the SSR Finder Tool for Pseudomolecules.

In Potato Genes: Putative SSRs have been annotated in both the PGSC and the ITAG gene models, use this tool to select your SSR motif, length, and output format.

Launch SSR Finder Tool for Transcripts
Launch SSR Finder Tool for Pseudomolecules