Search the Solanaceae Simple Sequence Repeat (SSR) Database

This site contains a database with all the solanaceae simple sequence repeats (SSRs) of length 10bp or more, with motifs from singlets to hexanucleotide, found in the PlantGDB PUTs sequences. Use the form below to submit queries to the database. A brief explanation of the query fields:

• Motif: selects SSRs made of a particular motif.
• Min Length: selects SSRs that are at least this long.
• Max Length: selects SSRs that are at most this long.
• Annotation: the identified SSR-containing EST sequences were searched against the UniProt UniRef100 sequence database and the annotation of the top hit (E-value cutoff <=1e-5), if any, was transitively applied as the annotation of the SSR sequence. eg: kinase, etc.
• PUT ID or GB accession #: enter a PUT identifier or a Genbank number to see if it contains a putative SSR sequence in the Solanaceae SSR database.