Solanaceae Transcript Assembly to Model Genome Mapping

We mapped the PlantGDB-generated Unique Transcript (PUTs) assemblies to loci from the Arabidopsis (TAIR8), Grape (v1) and Poplar (v1.1) genome releases using tblastx with a cutoff of E = 1-10.

This page will return the top 3 matches from the selected target genome when a PUT assembly ID, or member GenBank EST accession number is entered from any of the Solanaceae species (Capsicum annuum, Nicotiana benthamiana, Solanum lycopersicum, Solanum tuberosum, etc.).

Data from our model genome mapping database is also available for download from our FTP site.

Solanaceae Mapping Search

Select a model genome and enter a PlantGDB PUT Assembly ID (exact term, case insensitive) or GenBank EST Accession to find the mapped locus in the selected model genome at an e-value cutoff of E = 1-10. (e.g. PUT-161a-Solanum_lycopersicum-4, PUT-163a-Solanum_pennellii-7, DY344679)

Target Genome: