Solanaceae Simple Sequence Repeats (SSR)

Using an in silico approach simple sequence repeats (SSR) were identified using sequences from all Solanaceae transcript sequence assemblies within the PlantGDB PUTs database. SSRs are defined as repeats of at least 10 mononucleotides, 6 dinucleotides, 5 trinucleotides, 5 tetranucleotides, 5 pentanucleotides, and 5 hexanucleotides. We also designed primers to amplify these SSRs using Primer3.

Query SSR Database

The SSRs can be searched by motif, length, annotation and Genbank accession number.

SSR Summary Statistics

Summary data for most recent SSR identification pipeline results.

SSR Pipeline

An overview of the SSR pipeline.

SSR Downloads

Data from our SSR database is available for download from our FTP site.